Taxonomy

@article{chandler1923geological10,
    author = "Chandler, M. E. J",
    title = "Geological history of the genus Stratiotes",
    year = "1923",
    journal = "Geological Society of London Quarterly Journal, v. 79, p. 117-138",
    note = "talkorigins\_source = {true}; raw\_reference = {Chandler, M. E. J., 1923, Geological history of the genus Stratiotes: Geological Society of London Quarterly Journal, v. 79, p. 117-138.}"
}

@article{bronnimann1950the9,
    author = "Bronnimann, P",
    title = "The genus Hantkenina Cushman in Trinidad and Barbados, B.W.I",
    year = "1950",
    journal = "Journal of Paleontology, v. 24, p. 397-420",
    note = "talkorigins\_source = {true}; raw\_reference = {Bronnimann, P., 1950, The genus Hantkenina Cushman in Trinidad and Barbados, B.W.I: Journal of Paleontology, v. 24, p. 397-420.}"
}

@article{flower1950a16,
    author = "Flower, R. H. and Kummel, B. and Jr",
    title = "A classification of Nautiloidea",
    year = "1950",
    journal = "Journal of Paleontology, v. 24, p. 604-616",
    note = "talkorigins\_source = {true}; raw\_reference = {Flower, R. H., and Kummel, B., Jr., 1950, A classification of Nautiloidea: Journal of Paleontology, v. 24, p. 604-616.}"
}

@misc{beard1955the4,
    author = "Beard, J. S",
    title = "The classification of tropical American vegetation types",
    year = "1955",
    howpublished = "Ecology, v. 36, p. 89-100",
    note = "talkorigins\_source = {true}; raw\_reference = {Beard, J. S., 1955, The classification of tropical American vegetation types: Ecology, v. 36, p. 89-100.}"
}

@misc{banner1959the2,
    author = "Banner, F. T. and Blow, W. H",
    title = "The classification and stratigraphical distribution of the Globigerinaceae",
    year = "1959",
    howpublished = "Palaeontology, v. 2, p. 1-27",
    note = "talkorigins\_source = {true}; raw\_reference = {Banner, F. T., and Blow, W. H., 1959, The classification and stratigraphical distribution of the Globigerinaceae: Palaeontology, v. 2, p. 1-27.}"
}

@book{boucot1963two7,
    author = "Boucot, A. J. and Ehlers, G. M",
    title = "Two new genera of stricklandid brachiopods",
    year = "1963",
    publisher = "University of Michigan Museum Paleontological Contributions, v. 18, p. 47-66",
    note = "talkorigins\_source = {true}; raw\_reference = {Boucot, A. J., and Ehlers, G. M., 1963, Two new genera of stricklandid brachiopods: University of Michigan Museum Paleontological Contributions, v. 18, p. 47-66.}"
}

@article{rozhdestvensky1965growth34,
    author = "Rozhdestvensky, A. K",
    title = "Growth changes in Asian dinosaurs and some problems of their taxonomy",
    year = "1965",
    journal = "Palaeontological Journal, p. 95-109",
    note = "talkorigins\_source = {true}; raw\_reference = {Rozhdestvensky, A. K., 1965, Growth changes in Asian dinosaurs and some problems of their taxonomy: Palaeontological Journal, p. 95-109.}"
}

@techreport{greenwood1966phyletic21,
    author = "Greenwood, P. H. and Miles, R. S. and Patterson, C. and Rosen, D. E. and Weitzman, S. H. and Myers, G. S",
    title = "Phyletic studies of teleostean fishes, with a provisional classification of living forms",
    year = "1966",
    howpublished = "Bulletin of the American Museum of Natural History, v. 131, no. Art. 4, p. 339-456",
    note = "talkorigins\_source = {true}; raw\_reference = {Greenwood, P. H., Miles, R. S., Patterson, C., Rosen, D. E., Weitzman, S. H., and Myers, G. S., 1966, Phyletic studies of teleostean fishes, with a provisional classification of living forms: Bulletin of the American Museum of Natural History, v. 131, no. Art. 4, p. 339-456.}"
}

@misc{fitch1967construction15,
    author = "Fitch, W. M. and Margoliash, E",
    title = "Construction of phylogenetic trees",
    year = "1967",
    howpublished = "Science, v. 155, p. 279-284",
    note = "talkorigins\_source = {true}; raw\_reference = {Fitch, W. M., and Margoliash, E., 1967, Construction of phylogenetic trees: Science, v. 155, p. 279-284.}"
}

@misc{wilson1967the38,
    author = "Wilson, E. O. and Carpenter, F. M. and Brown, W. L",
    title = "The First Mesozoic Ants, with the Description of a New Subfamily",
    year = "1967",
    howpublished = "Psyche, v. 74, p. 1-19",
    note = "talkorigins\_source = {true}; raw\_reference = {Wilson, E. O., Carpenter, F. M., and Brown, W. L., 1967, The First Mesozoic Ants, with the Description of a New Subfamily: Psyche, v. 74, p. 1-19.}"
}

@techreport{romer1969topics32,
    author = "Romer, A. S",
    title = "Topics in therapsid evolution and classification",
    year = "1969",
    howpublished = "Bulletin of the Indian Geologists' Association, v. 2, p. 15-26",
    note = "talkorigins\_source = {true}; raw\_reference = {Romer, A. S., 1969, Topics in therapsid evolution and classification: Bulletin of the Indian Geologists' Association, v. 2, p. 15-26.}"
}

@article{welles1970dilophosaurus37,
    author = "Welles, S. P",
    title = "Dilophosaurus (Reptilia",
    year = "1970",
    journal = "Saurischia), a new name for a dinosaur: Journal of Paleontology, v. 44, p. 989",
    note = "talkorigins\_source = {true}; raw\_reference = {Welles, S. P., 1970, Dilophosaurus (Reptilia: Saurischia), a new name for a dinosaur: Journal of Paleontology, v. 44, p. 989.}"
}

@article{gruber1971problems22,
    author = "Gruber, A. L",
    title = "Problems of sexual dimorphism, population structure and taxonomy of the Ordovician genus Tetradella (Ostracoda)",
    year = "1971",
    journal = "Journal of Paleontology, v. 45, p. 6-22",
    note = "talkorigins\_source = {true}; raw\_reference = {Gruber, A. L., 1971, Problems of sexual dimorphism, population structure and taxonomy of the Ordovician genus Tetradella (Ostracoda): Journal of Paleontology, v. 45, p. 6-22.}"
}

@book{hubbs1971distribution23,
    author = "Hubbs, C. L. and Potter, I. C",
    title = "Distribution, Phylogeny and Taxonomy, in Hardisty, M. W., and Potter, I. C., eds., The Biology of Lampreys",
    year = "1971",
    publisher = "London, Academic Press, v. 1, p. 1-65",
    note = "talkorigins\_source = {true}; raw\_reference = {Hubbs, C. L., and Potter, I. C., 1971, Distribution, Phylogeny and Taxonomy, in Hardisty, M. W., and Potter, I. C., eds., The Biology of Lampreys: London, Academic Press, v. 1, p. 1-65.}"
}

@misc{boerske1972taxonomy6,
    author = "Boerske, J. R. A. and Jr",
    title = "Taxonomy and taphonomy of the North American amiid fishes",
    year = "1972",
    howpublished = "Geological Society of America, Abstracts with Programs, v. 4, no. 1, p. 3-4",
    note = "talkorigins\_source = {true}; raw\_reference = {Boerske, J. R. A., Jr., 1972, Taxonomy and taphonomy of the North American amiid fishes: Geological Society of America, Abstracts with Programs, v. 4, no. 1, p. 3-4.}"
}

@misc{kavanaugh1972hennigs24,
    author = "Kavanaugh, D. H",
    title = "Hennig's principles and methods of phylogenetic systematics",
    year = "1972",
    howpublished = "The Biologist, v. 54, p. 115-127",
    note = "talkorigins\_source = {true}; raw\_reference = {Kavanaugh, D. H., 1972, Hennig's principles and methods of phylogenetic systematics: The Biologist, v. 54, p. 115-127.}"
}

@misc{pflug1972systematik31,
    author = "Pflug, H. D",
    title = "Systematik der jung-prkambrischen Petalonamae",
    year = "1972",
    howpublished = "Palontologische Zeitschrift, v. 46, p. 56-67",
    note = "talkorigins\_source = {true}; raw\_reference = {Pflug, H. D., 1972, Systematik der jung-prkambrischen Petalonamae: Palontologische Zeitschrift, v. 46, p. 56-67.}"
}

@misc{bakker1974dinosaur1,
    author = "Bakker, R. T. and Galton, P. M",
    title = "Dinosaur monophyly and a new class of vertebrates",
    year = "1974",
    howpublished = "Nature, v. 248, p. 168-172",
    note = "talkorigins\_source = {true}; raw\_reference = {Bakker, R. T., and Galton, P. M., 1974, Dinosaur monophyly and a new class of vertebrates: Nature, v. 248, p. 168-172.}"
}

@misc{barsbold1974saurornithoididae3,
    author = "Barsbold, R",
    title = "Saurornithoididae, a new family of small theropod dinosaurs from Central Asia and North America",
    year = "1974",
    howpublished = "Palaeont. Polonica, v. 30, p. 5-22",
    note = "talkorigins\_source = {true}; raw\_reference = {Barsbold, R., 1974, Saurornithoididae, a new family of small theropod dinosaurs from Central Asia and North America: Palaeont. Polonica, v. 30, p. 5-22.}"
}

@article{thulborn1975dinosaur36,
    author = "Thulborn, R. A",
    title = "Dinosaur polyphyly and the classification of archosaurs and birds",
    year = "1975",
    journal = "Aust. Journal Zoology, v. 23, p. 249-270",
    note = "talkorigins\_source = {true}; raw\_reference = {Thulborn, R. A., 1975, Dinosaur polyphyly and the classification of archosaurs and birds: Aust. Journal Zoology, v. 23, p. 249-270.}"
}

@book{bertrandsarfati1976an5,
    author = "Bertrand-Sarfati, J",
    title = "An attempt to classify Late Precambrian stromatolite microstructure, in Walter, M. R., ed., Stromatolites",
    year = "1976",
    publisher = "Amsterdam, Elsevier, p. 251-259",
    note = "talkorigins\_source = {true}; raw\_reference = {Bertrand-Sarfati, J., 1976, An attempt to classify Late Precambrian stromatolite microstructure, in Walter, M. R., ed., Stromatolites: Amsterdam, Elsevier, p. 251-259.}"
}

@incollection{charig1976dinosaur11,
    author = "Charig, A. J",
    editor = "Bellairs, A. and Cox, C. B.",
    title = "Dinosaur Monophyly and a New Class of Vertebrates: A Critical Review",
    year = "1976",
    booktitle = "Morphology and Biology of the Reptiles, 3 of Linnean Society Symposia Series",
    publisher = "New York, Academic Press, p. 65-104",
    note = "talkorigins\_source = {true}; raw\_reference = {Charig, A. J., 1976, Dinosaur Monophyly and a New Class of Vertebrates: A Critical Review, in Bellairs, A., and Cox, C. B., eds., Morphology and Biology of the Reptiles, 3 of Linnean Society Symposia Series: New York, Academic Press, p. 65-104.}"
}

@misc{macfadden1976cladistic26,
    author = "MacFadden, B. J",
    title = "Cladistic analysis of primitive equids, with notes on other perissodactyls",
    year = "1976",
    howpublished = "Systematic Zoology, v. 25, p. 1-15",
    note = "talkorigins\_source = {true}; raw\_reference = {MacFadden, B. J., 1976, Cladistic analysis of primitive equids, with notes on other perissodactyls: Systematic Zoology, v. 25, p. 1-15.}"
}

@misc{osmolska1976new29,
    author = "Osmolska, H",
    title = "New light on the skull anatomy and systematic position of Oviraptor",
    year = "1976",
    howpublished = "Nature, v. 262, p. 683-684",
    note = "talkorigins\_source = {true}; raw\_reference = {Osmolska, H., 1976, New light on the skull anatomy and systematic position of Oviraptor: Nature, v. 262, p. 683-684.}"
}

@book{gould1977ontogeny18,
    author = "Gould, S. J",
    title = "Ontogeny and Phylogeny",
    year = "1977",
    publisher = "Cambridge, Mass., Harvard University Press",
    note = "talkorigins\_source = {true}; raw\_reference = {Gould, S. J., 1977, Ontogeny and Phylogeny: Cambridge, Mass., Harvard University Press.}"
}

@misc{gould1979a19,
    author = "Gould, S. J",
    title = "A quahog is a quahog",
    year = "1979",
    howpublished = "Natural History Magazine, v. 888, no. 8, p. 18- 26",
    note = "talkorigins\_source = {true}; raw\_reference = {Gould, S. J., 1979, A quahog is a quahog: Natural History Magazine, v. 888, no. 8, p. 18- 26.}"
}

@misc{steel1979the35,
    author = "Steel, R. and Harvey, A. P",
    title = "The Encclopedia of Prehistoric Life",
    year = "1979",
    howpublished = "New York, McGraw-Hill",
    note = "talkorigins\_source = {true}; raw\_reference = {Steel, R., and Harvey, A. P., 1979, The Encclopedia of Prehistoric Life: New York, McGraw-Hill.}"
}

@book{corbet1980world13,
    author = "Corbet, G. B. and Hill, J. E",
    title = "World List of Mammalian Species",
    year = "1980",
    publisher = "Ithaca, New York, Cornell University Press",
    note = "talkorigins\_source = {true}; raw\_reference = {Corbet, G. B., and Hill, J. E., 1980, World List of Mammalian Species: Ithaca, New York, Cornell University Press.}"
}

@misc{chatterjee1982phylogeny12,
    author = "Chatterjee, S",
    title = "Phylogeny and classification of thecodontian reptiles",
    year = "1982",
    howpublished = "Nature, v. 295, p. 317-320",
    note = "talkorigins\_source = {true}; raw\_reference = {Chatterjee, S., 1982, Phylogeny and classification of thecodontian reptiles: Nature, v. 295, p. 317-320.}"
}

@misc{lewin1982biology25,
    author = "Lewin, R",
    title = "Biology is not postage stamp collecting",
    year = "1982",
    howpublished = "Science, v. 216, p. 718-720",
    note = "talkorigins\_source = {true}; raw\_reference = {Lewin, R., 1982, Biology is not postage stamp collecting: Science, v. 216, p. 718-720.}"
}

@misc{margulis1982five28,
    author = "Margulis, L. and Schwartz, K. V",
    title = "Five Kingdoms",
    year = "1982",
    howpublished = "An Illustrated Guide to the Phyla of Life on Earth: San Francisco, W.H. Freeman \& Co., 338 p",
    note = "talkorigins\_source = {true}; raw\_reference = {Margulis, L., and Schwartz, K. V., 1982, Five Kingdoms: An Illustrated Guide to the Phyla of Life on Earth: San Francisco, W.H. Freeman \& Co., 338 p.}"
}

@misc{parker1982mcgrawhill30,
    author = "Parker, S. P",
    title = "McGraw-Hill Synopsis and Classification of Living Organisms",
    year = "1982",
    howpublished = "New York, McGraw-Hill; 2 Volumes",
    note = "talkorigins\_source = {true}; raw\_reference = {Parker, S. P., 1982, McGraw-Hill Synopsis and Classification of Living Organisms: New York, McGraw-Hill; 2 Volumes.}"
}

@misc{cracraft1983systematics14,
    author = "Cracraft, J",
    title = "Systematics, comparative biology, and the case against creationism, in Godfrey, L. R., ed., Scientists Confront Creationism",
    year = "1983",
    howpublished = "New York, W.W. Norton, p. 163-169",
    note = "talkorigins\_source = {true}; raw\_reference = {Cracraft, J., 1983, Systematics, comparative biology, and the case against creationism, in Godfrey, L. R., ed., Scientists Confront Creationism: New York, W.W. Norton, p. 163-169.}"
}

@misc{gould1985treasures20,
    author = "Gould, S. J",
    title = "Treasures in a taxonomic wastebasket",
    year = "1985",
    howpublished = "Natural History Magazine, v. 94 (December), p. 22-33",
    note = "talkorigins\_source = {true}; raw\_reference = {Gould, S. J., 1985, Treasures in a taxonomic wastebasket: Natural History Magazine, v. 94 (December), p. 22-33.}"
}

@book{briggs1986problematica8,
    author = "Briggs, D. E. G. and Conway Morris, S",
    title = "Problematica from the Middle Cambrian Burgess Shale of British Columbia, in Hoffman, A., and Nitecki, M. H., eds., Problematic Fossil Taxa",
    year = "1986",
    publisher = "New York, Oxford University Press, p. 167-183",
    note = "talkorigins\_source = {true}; raw\_reference = {Briggs, D. E. G., and Conway Morris, S., 1986, Problematica from the Middle Cambrian Burgess Shale of British Columbia, in Hoffman, A., and Nitecki, M. H., eds., Problematic Fossil Taxa: New York, Oxford University Press, p. 167-183.}"
}

@book{rozanov1986problematica33,
    author = "Rozanov, A. Y",
    title = "Problematica of the Early Cambrian, in Hoffman, A., and Nitecki, M. H., eds., Problematic Fossil Taxa",
    year = "1986",
    publisher = "New York, Oxford University Press, p. 87-96",
    note = "talkorigins\_source = {true}; raw\_reference = {Rozanov, A. Y., 1986, Problematica of the Early Cambrian, in Hoffman, A., and Nitecki, M. H., eds., Problematic Fossil Taxa: New York, Oxford University Press, p. 87-96.}"
}

@misc{gauthier1987saurischian17,
    author = "Gauthier, J",
    title = "Saurischian monophyly and the origin of birds",
    year = "1987",
    howpublished = "Memoirs of the California Academy of Science, v. 8, p. 1-55",
    note = "talkorigins\_source = {true}; raw\_reference = {Gauthier, J., 1987, Saurischian monophyly and the origin of birds: Memoirs of the California Academy of Science, v. 8, p. 1-55.}"
}

@incollection{schaeffer1987deuterostome,
    author = "Schaeffer, Bobb",
    title = "Deuterostome Monophyly and Phylogeny",
    year = "1987",
    booktitle = "Evolutionary Biology",
    url = "https://doi.org/10.1007/978-1-4615-6986-2\_8",
    doi = "10.1007/978-1-4615-6986-2\_8",
    pages = "179-235"
}

@misc{margulis1988five27,
    author = "Margulis, L. and Schwartz, K",
    title = "Five Kingdoms",
    year = "1988",
    howpublished = "An Illustrated Guide to the Phyla of Life on Earth [2nd ed.]: New York, W. H. Freeman",
    note = "talkorigins\_source = {true}; raw\_reference = {Margulis, L., and Schwartz, K., 1988, Five Kingdoms: An Illustrated Guide to the Phyla of Life on Earth [2nd ed.]: New York, W. H. Freeman.}"
}

@article{novas1996dinosaur,
    author = "Novas, Fernando E.",
    title = "Dinosaur monophyly",
    year = "1996",
    journal = "Journal of Vertebrate Paleontology",
    url = "https://doi.org/10.1080/02724634.1996.10011361",
    doi = "10.1080/02724634.1996.10011361",
    number = "4",
    pages = "723-741",
    volume = "16"
}

To obtain additional information on the phylogenetic relationships within the family Trypanosomatidae (order Kinetoplastida), we have sequenced the small subunit ribosomal RNA genes from the endosymbiont containing species Herpetomonas roitmani TCC080, Herpetomonas sp. TCC263, Crithidia oncopelti ATCC 12982 and a partial large subunit rRNA gene from H. roitmani. The small subunit sequences in the two isolates of Herpetomonas are very similar but not identical, and so are their restriction digest profiles of kinetoplast DNA. The size of minicircles in both isolates is 4.2 kilobases. The inferred ribosomal RNA phylogenetic trees shows the genera Herpetomonas and Crithidia as polyphyletic. Endosymbiont‐bearing herpetomonads cluster with the endosymbiont‐bearing crithidias and a blastocrithidia to form a monophyletic clade, whereas the endosymbiont‐free members of these genera are found elsewhere in the tree. These data support the hypothesis of a monophyletic origin of endosymbiosis in trypanosomatid evolution and also suggest that a taxonomic revision is needed in order to better describe the natural affinities in this family.

@article{hollar1998monophyly,
    author = "Hollar, Laura and Lukeš, Julius and Maslov, Dmitri A.",
    title = "Monophyly of Endosymbiont Containing Trypanosomatids: Phylogeny versus Taxonomy",
    year = "1998",
    journal = "Journal of Eukaryotic Microbiology",
    abstract = "To obtain additional information on the phylogenetic relationships within the family Trypanosomatidae (order Kinetoplastida), we have sequenced the small subunit ribosomal RNA genes from the endosymbiont containing species Herpetomonas roitmani TCC080, Herpetomonas sp. TCC263, Crithidia oncopelti ATCC 12982 and a partial large subunit rRNA gene from H. roitmani. The small subunit sequences in the two isolates of Herpetomonas are very similar but not identical, and so are their restriction digest profiles of kinetoplast DNA. The size of minicircles in both isolates is 4.2 kilobases. The inferred ribosomal RNA phylogenetic trees shows the genera Herpetomonas and Crithidia as polyphyletic. Endosymbiont‐bearing herpetomonads cluster with the endosymbiont‐bearing crithidias and a blastocrithidia to form a monophyletic clade, whereas the endosymbiont‐free members of these genera are found elsewhere in the tree. These data support the hypothesis of a monophyletic origin of endosymbiosis in trypanosomatid evolution and also suggest that a taxonomic revision is needed in order to better describe the natural affinities in this family.",
    url = "https://doi.org/10.1111/j.1550-7408.1998.tb04539.x",
    doi = "10.1111/j.1550-7408.1998.tb04539.x",
    number = "3",
    pages = "293-297",
    volume = "45"
}

@article{wilkinson1998robust,
    author = "Wilkinson, Mark and Upchurch, Paul and Barrett, Paul M. and Gower, David J. and Benton, Michael J.",
    title = "Robust dinosaur phylogeny?",
    year = "1998",
    journal = "Nature",
    url = "https://doi.org/10.1038/24763",
    doi = "10.1038/24763",
    number = "6710",
    pages = "423-424",
    volume = "396"
}

@incollection{colloff2009identification,
    author = "Colloff, Matthew J.",
    title = "Identification and taxonomy, classification and phylogeny",
    year = "2009",
    booktitle = "Dust Mites",
    url = "https://doi.org/10.1007/978-90-481-2224-0\_1",
    doi = "10.1007/978-90-481-2224-0\_1",
    pages = "1-44"
}

@incollection{crossref2009identification,
    title = "Identification and taxonomy, classification and phylogeny",
    year = "2009",
    booktitle = "Dust Mites",
    url = "https://doi.org/10.1071/9780643100497.ch01",
    doi = "10.1071/9780643100497.ch01",
    pages = "1-44"
}

@incollection{gonzlez2009taxonomy,
    author = "González, Mariela and Gómez, Patricia and Polle, Jürgen",
    title = "Taxonomy and Phylogeny of the Genus Dunaliella",
    year = "2009",
    booktitle = "The Alga Dunaliella",
    url = "https://doi.org/10.1201/b10300-3",
    doi = "10.1201/b10300-3",
    pages = "15-44"
}

@article{lombard2012phylogeny,
    author = "Lombard, L. and Shivas, R. G. and To-Anun, C. and Crous, P. W.",
    title = "Phylogeny and taxonomy of the genus Cylindrocladiella",
    year = "2012",
    journal = "Mycological Progress",
    url = "https://doi.org/10.1007/s11557-011-0799-1",
    doi = "10.1007/s11557-011-0799-1",
    number = "4",
    pages = "835-868",
    volume = "11"
}

@incollection{berta2015phylogeny,
    author = "Berta, Annalisa and Sumich, James L. and Kovacs, Kit M.",
    title = "Phylogeny, Taxonomy, and Classification",
    year = "2015",
    booktitle = "Marine Mammals",
    url = "https://doi.org/10.1016/b978-0-12-397002-2.00002-8",
    doi = "10.1016/b978-0-12-397002-2.00002-8",
    pages = "17-34"
}

@incollection{gonzález2019taxonomy,
    author = "González, Marieta A. and Gómez, Patricia I. and Polle, Jürgen E. W.",
    title = "Taxonomy and Phylogeny of the Genus Dunaliella",
    year = "2019",
    booktitle = "The Alga Dunaliella",
    url = "https://doi.org/10.1201/9780429061639-2",
    doi = "10.1201/9780429061639-2",
    pages = "15-44"
}